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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaagcaagaaacattatccactcagctttcattgtcattcctaaacagtctcgttccttccttttctgtaacattgaactgataaatatacaatgtctatattatcttccttttacagAAGACGGTTCTACTGACAAAGAAGCAAATGGTATTGTCCTCTCCCATGTGGCAATCCCCATTCCGCATAGTGCTCATCGTTTTGTGAAATTATTAAATAC

Basic information

species Oryza sativa
transcript LOC_Os01g64000.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86260185|gb|CI066058.1|CI066058
EST:     CTCGTCTCAAAGAGGCAGAG                         AAGACGGTTCTACTGACAAAGAAGCAAATGGTATTGTCCTCTCCCATGTGG
genomic: CTCGTCTCAAAGAGGCAGAGgtattaaagc ... ccttttacagAAGACGGTTCTACTGACAAAGAAGCAAATGGTATTGTCCTCTCCCATGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtaacattgaactgataaatatacaatgtctatattatcttccttttacagAAGACGGTTCTACTGACAAAGAAGCAAATGGTATTGTCCTCTCCCATGTGGCAATCCCCATTCCGCATAGTGCTCATCGTTTTGTGAAATTATTAAATAC
             aactgat  putative branch site (score: 3)
                                    tattatcttcctttt  putative PPT
                  ataaatatacaatgtc  TA-rich tract