Sequence
atgc intronic sequence ATGC exonic sequenceCCACAGAGAGGATGGCTGCGCCGAGAAGACGGTGGAGCGCCGCCAACGGCGCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgttgctccgaaccttttagtttctatgtatcgttaagacattttgcatggagattgaaatttttatgaataatgctacag
Basic information
species | Oryza sativa |
transcript | LOC_Os01g64000.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218497745|gb|FG966598.1|FG966598EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAACTCGA
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCACAGAGAGGATGGCTGCGCCGAGAAGACGGTGGAGCGCCGCCAACGGCGCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgttgctccgaaccttttagtttctatgtatcgttaagacattttgcatggagattgaaatttttatgaataatgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC