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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCGCAGCAGCCTCATTTGAGCATCCCAGAGACTGAAGCTGGGAAAACACACAGGCAATACCGTCAACTTCTGAACCGTTCCCTCACGGTTGTCTCAGgtaagttagtgtcaagcttctgcctctaaagtgtgtttctgtatttgcctttatgctctggcacaaatcgatcatgccaattactacagaatagtaagag...

Basic information

species Oryza sativa
transcript LOC_Os01g62570.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G004459_T02 (Zea mays), 5'ss of exon 11
GCGGCGCAGCAGCCTCATTTGAGCATCCCAGAGACTGAAGCTGGGAAAACACACAGGCAATACCGTCAACTTCTGAACCGTTCCCTCACGGTTGTCTCAGgtaagttagtgtcaagcttctgcctctaaagtgt-gtttctgtatttgcctttatgctctggcacaaatcgatcatgccaattactacagaatagtaagag-----------------------------------------------------------------------------------------------
|| ||||||||||||||||||||||| |||||||||||| |||| ||| |||   ||||||| || |||||||| |||||||| || | ||||||||| ||| ||||     ||  |||  |  | | ||  || |  |    ||    ||  |         | ||    |      |||| | || | |    |  |                                                                                                 
GCTGCGCAGCAGCCTCATTTGAGCATTCCAGAGACTGAAACTGGAAAAGCACGTCGGCAATATCGGCAACTTCTAAACCGTTCGCTAATGGTTGTCTCTGgtgagttgcatgcacccttgagtttgtgaatggttgaattaacatcatactgaacatagaactataagagtacaggtgcaatgattagaaatctatctgtctgctgatgctaatatataatagtccttaaatattcagtcaatgtgaaagttctatgaggtctgacttatgctgatactgcactaataatttgcag

upper sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G071071_T01 (Zea mays), 5'ss of exon 13
GCGGCGCAGCAGCCTCATTTGAGCATCCCAGAGACTGAAGCTGGGAAAACACACAGGCAATACCGTCAACTTCTGAACCGTTCCCTCACGGTTGTCTCAGgtaagttagtgtcaagcttctgcctctaaagtgtgtttctgtatttgcctttatgctc----tggcacaaatcgatcatgccaatt-actacagaatagtaagag----------------------------------------------------------------------------------------------
|| ||||| | ||| ||||||||||| ||||||||||||||||| ||||||| | ||||||| || |||||||| |||||||| || | ||||||||| ||| ||||     ||  ||| ||  | | ||  ||   | |     |     ||| ||     | | ||| |     ||||   ||| | || |||       |                                                                                                
GCTGCGCAACTGCCCCATTTGAGCATTCCAGAGACTGAAGCTGGAAAAACACGCCGGCAATATCGGCAACTTCTAAACCGTTCGCTAATGGTTGTCTCTGgtgagttgtatgcacccttgtgtttgtgaatggttgatttaacactatacctatactgaacatagaacagagactacatgtgcattgattagagatctacctgtctgctgatgctagtatatagtttctgtaaatattcagtcaatgtggaagttctaggaggtctgacttatgctgatactgcattaataatttgcag