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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGGCAAGCAGAGCTTGCGAGTCGTCGTCATCGGCGACCCTGGCACCGGCAAGTCCAGCCTCGTCGTGTCCGCCGCCACCGAGGCGACGTCCCCCGCgtactgccccccacccgcctccccgtcgactacttcgccgaccgcatccccatcaccatcgtcgacacctcctccaggtcctccactgcccctcacgctagatttgcgggtgtatttttttttgttgggggatttgtggattttgattcgttgacaattctgaattgctgattcag

Basic information

species Oryza sativa
transcript LOC_Os01g62570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G071071_T01 (Zea mays), 5'ss of exon 1
TGGCGGGCAAGCAGAGCTTGCGAGTCGTCGTCATCGGCGACCCTGGCACCGGCAAGTCCAGCCTCGTCGTGTCCGCCGCCACCGAGGCGACGTCCCCCGCgtactgccccccacccgcctccccgtcgactacttcgccgaccgcatccccatcaccatcgtcgacacctcctccaggt----cctccactgcccctc------acgctagatttgcgggtgtatttttttttgttggg--ggatttgtggatttt----gattcgttgacaattctgaattgctg--att-cag
                                                                             |   ||   |  |||| || |||||  ||||||||||||||||||||| ||| || ||| |||||||| |||||||||||||| ||||||| || |||||||    ||| | |  | ||||      | |   |||   ||| |   ||   | |||  |||  | ||   |||||       | |  |||||    |  |  | ||||  ||| |||
----------------------------------------------------------------------------AGTTTCCCGAG-AACGTGCCTCGCGTCATGCCCCCCACCCGCCTCCCCGCCGATTATTTCCCCGACCGCGTCCCCATCACCATCATCGACACGTCGTCCAGgtatccccttcgcacctcctcccgtgcatgtcggatactcggattcgttagatcttgacgggatgaatggatggatacctggcgttgagttgatttgtgcgcgtcgctgtgattgcag

upper sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 1
TGGCGGGCAAGCAGAGCTTGCGAGTCGTCGTCATCGGCGACCCTGGCACCGGCAAGTCCAGCCTCGTCGTGTCCGCCGCCACCGAGGCGACGTCCCCCGCgtactgccccccacccgcctccccgtcgactacttcgccgaccgcatccccatcaccatcgtcgacacctcctccaggtcctcc-actgc----ccctcacgctagat-ttgcgggtgtatttttttttgttgggggatttgtggattttgattcg--ttgacaattc-tgaattgctgatt-cag
                                                                                 ||  |   |||| || |||||  ||||||||||||||||||||| |||||||||| |||| ||| |||||||||| ||| ||||||| || |||||||  ||| || ||    |||||   |      |  ||| |   ||   | |||  |||     ||   |  | |  | |  ||||   | |  |      ||||| |||
-----------------------------------------------------------------------------AGTTCCCCGAGAACGTACCACGCGTCATGCCCCCCACCCGCCTCCCCGCCGACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgaccgcgtccccctcctaccgcgcatctcggattcgttagatcttgacgggatggatgaatacctggggttgagttgattttgcgcgtccctttgattgcag