1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttcttgttcttctccttcttctagtgtttctatcagtattggtatgtataagagaacattactttttttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGC
species | Oryza sativa |
transcript | LOC_Os01g62440.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAG GGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCEST: gi|58670594|gb|CK059280.1|CK059280
genomic: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGgttcttgttc ... tttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCC
EST: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAG GGAAGCAATGCACAGAGGAACCTCGATCTTTT-ACCAACTGCTACCTTTCCEST: gi|29636271|gb|CB641280.1|CB641280
genomic: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGgttcttgttc ... tttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCC
EST: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAG GGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCEST: gi|29633414|gb|CB638423.1|CB638423
genomic: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGgttcttgttc ... tttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCC
EST: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAG GGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCC
genomic: CATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGgttcttgttc ... tttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCC
tagtgtttctatcagtattggtatgtataagagaacattactttttttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGC
cattactttttttcct CT-rich tract
aacattacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttgttcttctccttcttctagtgtttctatcagtattggtatgtataagagaacattactttttttcctacagGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG