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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caattattctccaatggcatatttgggttccttgaagtaggatcactttctcaatatcgtcattggggtattacattccaattctggtgatacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAAGTTAGTGTCGTTGTGGAAGCAGCCCATCCACGTGATGACATCTTATCAG

Basic information

species Oryza sativa
transcript LOC_Os01g62440.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62440.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G082260_T02 (Zea mays), 3'ss of exon 12
caattat-tctccaatggcatatttgggttccttgaagtagg--atcactttctcaatatcgtcattggggtatta-cattccaattctggtgatacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAAGTTAGTGTCGTTGTGGAAGCAGCCCATCCACGTGATGACATCTTATCAG
    | | ||   |||   ||  |  |  |   |   ||||    || |  | | | |  | |  |      || |  |||    |||   ||  ||||| ||||||||||| |||| |||| |     |||||  |||||||||||||||| |||| |||||   ||||||| |||| |||||||||||||| || |||||||
---ctgtatcatgaatcagattatcagaatgaatactgtagcctgtctccgtttgatttccattttcctctcatgagtattaatcttccaatgccacttc-cagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAAGTCAGTGTTACTGTGGAAACAGCTCATCCACGTGATGATATATTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88668990|gb|CI719947.1|CI719947
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAAC
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAAC
EST: gi|88666182|gb|CI716338.1|CI716338
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGAT
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGAT
EST: gi|88973217|gb|CI717746.1|CI717746
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGC
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGC
EST: gi|88905635|gb|CI712934.1|CI712934
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACCTGGGAAAGTGGGAGATGA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAAC-TGGGAAAGTGGGAGATGA
EST: gi|88973605|gb|CI718033.1|CI718033
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTA
EST: gi|88668065|gb|CI722804.1|CI722804
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|84117186|gb|CD150953.1|CD150953
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88973910|gb|CI718318.1|CI718318
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGG
EST: gi|88670969|gb|CI725085.1|CI725085
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88665660|gb|CI715816.1|CI715816
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88671436|gb|CI725552.1|CI725552
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|4716411|gb|AU057527.1|AU057527
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88667770|gb|CI722509.1|CI722509
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88672844|gb|CI726960.1|CI726960
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88595326|gb|CI714147.1|CI714147
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|29670924|gb|CB667199.1|CB667199
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88673071|gb|CI727186.1|CI727186
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|86436915|gb|CI118637.1|CI118637
EST:     CTTTGCTTGTTATAGAG                         CTTGGGATCCCAAGCTACAGCCGT-GTTTCAACTGGGAAAGTGGGA-ATGA
genomic: CTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGAT-CCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGA
EST: gi|88594904|gb|CI715060.1|CI715060
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTT
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTT
EST: gi|88674757|gb|CI728870.1|CI728870
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88972691|gb|CI717417.1|CI717417
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGT
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGT
EST: gi|88667581|gb|CI722318.1|CI722318
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88675010|gb|CI729123.1|CI729123
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGG
EST: gi|88672883|gb|CI726999.1|CI726999
EST:     TGATTCTTAAGTTTATTAAGGATCGTCTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88676179|gb|CI730292.1|CI730292
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATG
EST: gi|88665483|gb|CI715639.1|CI715639
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|89172650|gb|CI721709.1|CI721709
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAG
EST: gi|88670202|gb|CI723723.1|CI723723
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGCTTCAACTGGGAAAGTGGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGG
EST: gi|88908927|gb|CI716652.1|CI716652
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGGGGTTTCAACTGGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGG
EST: gi|88676890|gb|CI731003.1|CI731003
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88904571|gb|CI711870.1|CI711870
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTG
EST: gi|88667235|gb|CI715393.1|CI715393
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCA
EST: gi|15847582|gb|BI795872.1|BI795872
EST:     TGATTCTTAAGTTTATTAAGGATCGTTT-GCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88669369|gb|CI723287.1|CI723287
EST:     TGATTCTTAAGTTTATTAAGGATCGTTCGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88904942|gb|CI712241.1|CI712241
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGA
EST: gi|88972452|gb|CI717192.1|CI717192
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTA
EST: gi|89172415|gb|CI721474.1|CI721474
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|89171756|gb|CI720815.1|CI720815
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88904358|gb|CI711666.1|CI711666
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88671281|gb|CI724327.1|CI724327
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 65 (upstream exon), 72 (downstream exon)
Score: 14

GTTGTTGGAATACTTGAGAAGACAACCAAAGGGAAAGAAGTATAAAGCCCTGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAAGTTAGTGTCGTTGTGGAAGCAGCCCATCCACGTGATGACATCTTATCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctcaatatcgtcattggggtattacattccaattctggtgatacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAAGTTAGTGTCGTTGTGGAAGCAGCCCATCCACGTGATGACATCTTATCAG
                       tattacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caattattctccaatggcatatttgggttccttgaagtaggatcactttctcaatatcgtcattggggtattacattccaattctggtgatacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAAGTTAGTGTCGTTGTGGAAGCAGCCCATCCACGTGATGACATCTTATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG