1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactgtctcactctcaattcttcgctgtattttcaaatttccatagttccttcagtcatagatagaacataaactaatatatgtgggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACGCAAGGTCAGCTTTGATTGCCATGGTTCAGTCACTTCAACATGCCAAAA
species | Oryza sativa |
transcript | LOC_Os01g61880.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACGAT AATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACEST: gi|87039381|gb|CI194003.1|CI194003
genomic: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAATgtactgtctc ... ggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
EST: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAAT AATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACEST: gi|29688221|gb|CB684496.1|CB684496
genomic: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAATgtactgtctc ... ggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
EST: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAAT AATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACEST: gi|86519889|gb|CI160095.1|CI160095
genomic: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAATgtactgtctc ... ggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
EST: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAAT AATATTATATAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACEST: gi|86480722|gb|CI123355.1|CI123355
genomic: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAATgtactgtctc ... ggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
EST: GTCGCTGAAAGTGATCACAAT AATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACEST: gi|86478047|gb|CI120680.1|CI120680
genomic: GTCGCTGAAAGTGATCACAATgtactgtctc ... ggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
EST: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAAT AATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
genomic: TCGAGTGGTTTAAAGGAGTCATGAACGATGTCGCTGAAAGTGATCACAATgtactgtctc ... ggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGAC
ccatagttccttcagtcatagatagaacataaactaatatatgtgggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACGCAAGGTCAGCTTTGATTGCCATGGTTCAGTCACTTCAACATGCCAAAA
aactaat putative branch site (score: 45)
atagaacataaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtctcactctcaattcttcgctgtattttcaaatttccatagttccttcagtcatagatagaacataaactaatatatgtgggaattgcagAATATTATAGAGATGCACAATTACCTGACCAGCGTGTATGAAGAAGGCGACGCAAGGTCAGCTTTGATTGCCATGGTTCAGTCACTTCAACATGCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT