1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgactagagaagctcttctatttcacctaccaaatgcatttggtctacaatcattttctaaccctggttatcttcacaatgttgcttcagGTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTACAAGAAGTATGACATTCTTTTGCTTATTGGTCTTGGAATTGGTGCTACT
species | Oryza sativa |
transcript | LOC_Os01g61880.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGACTTGAAACTACTTTTGTGGCGGACGCTCAGACAGAGGATACTAG GTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTAEST: gi|58667275|gb|CK055961.1|CK055961
genomic: AAGACTTGAAACTACAGTTGTGGCGGACGCTCAGACAGAGGATACTAGgtgactagag ... gttgcttcagGTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTA
EST: TCAAGACTTGAAACTACAGTTGTGGCGGACGCTCAGACAGAGGATACTAG GTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTA
genomic: TCAAGACTTGAAACTACAGTTGTGGCGGACGCTCAGACAGAGGATACTAGgtgactagag ... gttgcttcagGTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTA
gcatttggtctacaatcattttctaaccctggttatcttcacaatgttgcttcagGTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTACAAGAAGTATGACATTCTTTTGCTTATTGGTCTTGGAATTGGTGCTACT
ttctaac putative branch site (score: 14)
ttgcttc putative PPT
aatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactagagaagctcttctatttcacctaccaaatgcatttggtctacaatcattttctaaccctggttatcttcacaatgttgcttcagGTTTCCTAAGGTCCTTATTGATGGGCCCTATGGTGCACCGGCGCAAAACTACAAGAAGTATGACATTCTTTTGCTTATTGGTCTTGGAATTGGTGCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT