1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgattcaattttatgtaagtatgtaccaatgcatgtttagaactgtagaactaataatatagaattcattctcacaagtatgacaatgcaatttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG
species | Oryza sativa |
transcript | LOC_Os01g60410.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|58677585|gb|CK066272.1|CK066272
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|58600789|gb|CK011317.1|CK011317
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|88391945|gb|CI683764.1|CI683764
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|58594364|gb|CF992672.1|CF992672
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|58684372|gb|CK073059.1|CK073059
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|58592931|gb|CF991239.1|CF991239
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|38470328|gb|CF954459.1|CF954459
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: CGCCCCCTCGCGATCCGACCAGATCGGCGCGA GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGGAGEST: gi|58600178|gb|CK010706.1|CK010706
genomic: CGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGGCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|58683224|gb|CK071911.1|CK071911
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|112785779|gb|EE591396.1|EE591396
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGEST: gi|33688146|gb|CF316385.1|CF316385
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGA GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: TTCTCCGCCGCACCAATCCGCCCCCTCGCGATTCGACCAGATCGGCGCGAgtaagtcccc ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
tagaactaataatatagaattcattctcacaagtatgacaatgcaatttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG
ttctcac putative branch site (score: 159)
taataatatagaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattcaattttatgtaagtatgtaccaatgcatgtttagaactgtagaactaataatatagaattcattctcacaagtatgacaatgcaatttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - -tgtacca
- - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - -gaactaa