Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgtaatcaatgaactattttggtcagtttggtcttgcttacctttttgccctttggcttgtacaagctctggcattgatgagatcttataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTCCAGATAGTCCCTATGCTGGTGGAGTTTTCTTAGTGAATATTCATTTCCC

Basic information

species Oryza sativa
transcript LOC_Os01g60410.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89172328|gb|CI721387.1|CI721387
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|163925769|gb|EG714605.1|EG714605
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88676189|gb|CI730302.1|CI730302
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCNTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88573204|gb|CI664775.1|CI664775
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88671275|gb|CI724321.1|CI724321
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88669526|gb|CI723444.1|CI723444
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88339908|gb|CI649165.1|CI649165
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88719003|gb|CI742513.1|CI742513
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|1631641|gb|C19370.1|C19370
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88905008|gb|CI712307.1|CI712307
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|33691496|gb|CF319735.1|CF319735
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88330227|gb|CI658536.1|CI658536
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88332747|gb|CI660265.1|CI660265
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88669519|gb|CI723437.1|CI723437
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88570977|gb|CI662350.1|CI662350
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88669868|gb|CI723984.1|CI723984
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88669568|gb|CI723232.1|CI723232
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88347797|gb|CI655150.1|CI655150
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88904822|gb|CI712121.1|CI712121
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88336722|gb|CI643897.1|CI643897
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88408739|gb|CI686249.1|CI686249
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|163923069|gb|EG712790.1|EG712790
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88585162|gb|CI702772.1|CI702772
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88583712|gb|CI701215.1|CI701215
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88571310|gb|CI662683.1|CI662683
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|58592288|gb|CF990596.1|CF990596
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|58683175|gb|CK071862.1|CK071862
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGG--ATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88590510|gb|CI709375.1|CI709375
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88573946|gb|CI665715.1|CI665715
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|58669559|gb|CK058245.1|CK058245
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCGC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88592277|gb|CI710371.1|CI710371
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88451930|gb|CI694708.1|CI694708
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGAACATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88903885|gb|CI711587.1|CI711587
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88580389|gb|CI697314.1|CI697314
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88378434|gb|CI636381.1|CI636381
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88421899|gb|CI609777.1|CI609777
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88735939|gb|CI757514.1|CI757514
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88571459|gb|CI662832.1|CI662832
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|33688145|gb|CF316384.1|CF316384
EST:     TCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: TCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88674611|gb|CI728724.1|CI728724
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88344007|gb|CI638742.1|CI638742
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88692130|gb|CI735705.1|CI735705
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|218501187|gb|FG953295.1|FG953295
EST:     AGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: AGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|38470328|gb|CF954459.1|CF954459
EST:     CAAGGAACTAAAGGACCTGGAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88717043|gb|CI740553.1|CI740553
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88308645|gb|CI653532.1|CI653532
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|38468751|gb|CF952882.1|CF952882
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|33692171|gb|CF320410.1|CF320410
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88733051|gb|CI756228.1|CI756228
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88675375|gb|CI729488.1|CI729488
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|33658478|gb|CF281091.1|CF281091
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTTTATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88670836|gb|CI724952.1|CI724952
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGAACATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|87006558|gb|CI294941.1|CI294941
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88335271|gb|CI650236.1|CI650236
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|38471365|gb|CF955496.1|CF955496
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88579140|gb|CI688114.1|CI688114
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88908571|gb|CI713129.1|CI713129
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|33810778|gb|CF331283.1|CF331283
EST:     CATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88594027|gb|CI713981.1|CI713981
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|58595019|gb|CF993327.1|CF993327
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88581255|gb|CI698231.1|CI698231
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|163917796|gb|EG712134.1|EG712134
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88672478|gb|CI726594.1|CI726594
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88667122|gb|CI719258.1|CI719258
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88579768|gb|CI691753.1|CI691753
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88436484|gb|CI691204.1|CI691204
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88310948|gb|CI659551.1|CI659551
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|58690981|gb|CK079668.1|CK079668
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88338659|gb|CI644116.1|CI644116
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88329002|gb|CI658652.1|CI658652
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88675385|gb|CI729498.1|CI729498
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|14713790|gb|AU197755.1|AU197755
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88327117|gb|CI652155.1|CI652155
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|3107124|gb|D42862.1|D42862
EST:     ATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: ATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88666409|gb|CI716565.1|CI716565
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88584363|gb|CI701911.1|CI701911
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88673782|gb|CI727895.1|CI727895
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|58593001|gb|CF991309.1|CF991309
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88959436|gb|CI716805.1|CI716805
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
EST: gi|88327125|gb|CI652163.1|CI652163
EST:     CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG                         GTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC
genomic: CAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGgtatgagaaa ... ataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgccctttggcttgtacaagctctggcattgatgagatcttataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTCCAGATAGTCCCTATGCTGGTGGAGTTTTCTTAGTGAATATTCATTTCCC
                              cattgat  putative branch site (score: 4)
                                      agatcttataaattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatgtaatcaatgaactattttggtcagtttggtcttgcttacctttttgccctttggcttgtacaagctctggcattgatgagatcttataaatttagGTCCTGCTGGTGAGGATATGTTCCATTGGCAGGCGACCATTATGGGTCCTCCAGATAGTCCCTATGCTGGTGGAGTTTTCTTAGTGAATATTCATTTCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG