Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgattcaattttatgtaagtatgtaccaatgcatgtttagaactgtagaactaataatatagaattcattctcacaagtatgacaatgcaatttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g60410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89172328|gb|CI721387.1|CI721387
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCATCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|163925769|gb|EG714605.1|EG714605
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88676189|gb|CI730302.1|CI730302
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCATCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88573204|gb|CI664775.1|CI664775
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88671275|gb|CI724321.1|CI724321
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCATCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88669526|gb|CI723444.1|CI723444
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCATCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88339908|gb|CI649165.1|CI649165
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88719003|gb|CI742513.1|CI742513
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88905008|gb|CI712307.1|CI712307
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCATCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|33691496|gb|CF319735.1|CF319735
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88330227|gb|CI658536.1|CI658536
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88332747|gb|CI660265.1|CI660265
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88669519|gb|CI723437.1|CI723437
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88570977|gb|CI662350.1|CI662350
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88669868|gb|CI723984.1|CI723984
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88669568|gb|CI723232.1|CI723232
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88347797|gb|CI655150.1|CI655150
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88904822|gb|CI712121.1|CI712121
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88336722|gb|CI643897.1|CI643897
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88408739|gb|CI686249.1|CI686249
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|163923069|gb|EG712790.1|EG712790
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88585162|gb|CI702772.1|CI702772
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88583712|gb|CI701215.1|CI701215
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88571310|gb|CI662683.1|CI662683
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|58592288|gb|CF990596.1|CF990596
EST:     CACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88590510|gb|CI709375.1|CI709375
EST:     CTCCGTCCAGTNTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88573946|gb|CI665715.1|CI665715
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|58669559|gb|CK058245.1|CK058245
EST:     CGTCCAGTCTCCCACCCCCGA-CTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88592277|gb|CI710371.1|CI710371
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88451930|gb|CI694708.1|CI694708
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCA
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAA-Ggttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCA
EST: gi|88903885|gb|CI711587.1|CI711587
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88580389|gb|CI697314.1|CI697314
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88378434|gb|CI636381.1|CI636381
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88421899|gb|CI609777.1|CI609777
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88735939|gb|CI757514.1|CI757514
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88571459|gb|CI662832.1|CI662832
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88674611|gb|CI728724.1|CI728724
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88344007|gb|CI638742.1|CI638742
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88692130|gb|CI735705.1|CI735705
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88717043|gb|CI740553.1|CI740553
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88308645|gb|CI653532.1|CI653532
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|38468751|gb|CF952882.1|CF952882
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|33692171|gb|CF320410.1|CF320410
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88733051|gb|CI756228.1|CI756228
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88675375|gb|CI729488.1|CI729488
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|33658478|gb|CF281091.1|CF281091
EST:     TCCGTCCAGTCTCCCACACCCCCACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: TCCGTCCAGTCTCCCAC-CCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88670836|gb|CI724952.1|CI724952
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88335271|gb|CI650236.1|CI650236
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|38471365|gb|CF955496.1|CF955496
EST:     GTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: GTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88579140|gb|CI688114.1|CI688114
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88908571|gb|CI713129.1|CI713129
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88594027|gb|CI713981.1|CI713981
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|58595019|gb|CF993327.1|CF993327
EST:     CTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88581255|gb|CI698231.1|CI698231
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|163917796|gb|EG712134.1|EG712134
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88672478|gb|CI726594.1|CI726594
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88667122|gb|CI719258.1|CI719258
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88579768|gb|CI691753.1|CI691753
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88436484|gb|CI691204.1|CI691204
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGNGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88310948|gb|CI659551.1|CI659551
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|58690981|gb|CK079668.1|CK079668
EST:     CTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88338659|gb|CI644116.1|CI644116
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88329002|gb|CI658652.1|CI658652
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88675385|gb|CI729498.1|CI729498
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|14713790|gb|AU197755.1|AU197755
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88327117|gb|CI652155.1|CI652155
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88666409|gb|CI716565.1|CI716565
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88584363|gb|CI701911.1|CI701911
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTTCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88673782|gb|CI727895.1|CI727895
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|58593001|gb|CF991309.1|CF991309
EST:     CCCCCGA-CTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATTGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88959436|gb|CI716805.1|CI716805
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
EST: gi|88327125|gb|CI652163.1|CI652163
EST:     CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAG                         GGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG
genomic: CTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 56 (upstream exon), 75 (downstream exon)
Score: 116

TTGCGCACAAAAACAAGCCGGACCCGGAGCGGAAACCGAGCGAGGGCTCTCTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGgttgagcaca ... atttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaactaataatatagaattcattctcacaagtatgacaatgcaatttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG
                       ttctcac  putative branch site (score: 116)
      taataatatagaattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgattcaattttatgtaagtatgtaccaatgcatgtttagaactgtagaactaataatatagaattcattctcacaagtatgacaatgcaatttaagcagGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGACCTGCAGAAAGATCCTCCAACATCATGCAGTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG