1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTTGAGCGGATAGAGGAGGGATGGATGGGAATTTCGGGAGCGAGGAGCGGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtccacttaacccgttaaccctctttctttttctggcttagttttcagcacttcaatcgctcagttttagtctgctagtaggggtgaaaacgg...
species | Oryza sativa |
transcript | LOC_Os01g60120.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCG GTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGACEST: gi|29669063|gb|CB665338.1|CB665338
genomic: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
EST: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCG GTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGACEST: gi|88328819|gb|CI646890.1|CI646890
genomic: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
EST: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCG GTATATGACATAACTCAAAAGGGTTAGCCTCCTCATTGCTTCA-GGGTTATEST: gi|88572980|gb|CI664551.1|CI664551
genomic: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGG-TTAGC-TC-TCATTGCTTCAAGGGTTAT
EST: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCG GTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGACEST: gi|88340802|gb|CI636962.1|CI636962
genomic: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
EST: GATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCCATGTGCGCCGCG GTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
genomic: GATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCC-ATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTGAGCGGATAGAGGAGGGATGGATGGGAATTTCGGGAGCGAGGAGCGGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtccacttaacccgttaaccctctttctttttctggcttagttttcagcacttcaatcgctcagttttagtctgctagtaggggtgaaaacgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagggg