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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGAAAGTCTAAATGCAAAGGTTGCTGATTTTGGTCTTTCAAAGCTGGTATCTGACACAAAAAAGGGCCATGTTTCTACCCAAGTGAAGGGCACACTGgtatgtacttctggaacttcaaaatgcataacttttattgacaaaaaaatatttctagttgattactcttctgtgttgatatctag

Basic information

species Oryza sativa
transcript LOC_Os01g60060.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60060.1 (Oryza sativa), 5'ss of exon 19
lower sequence: AC193379.3_FGT001 (Zea mays), 5'ss of exon 18
GGATGAAAGTCTAAATGCAAAGGTTGCTGATTTTGGTCTTTCAAAGCTGGTATCTGACACAAAAAAGGGCCATGTTTCTACCCAAGTGAAGGGCACACTGgtatgtacttctggaacttcaaaatgcataacttttattgaca-aaaaaatatttctagttgattactcttctgtgt-tgatatctag
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GGATGAAAGTCTCAATGCTAAGGTTGCCGATTTTGGTCTTTCAAAACTTGTGTCTGACACACAAAAGGGTCATGTTTCTACCCAAGTGAAGGGAACATTGgtatgtattttggatattctctg--gcgtaatttctgttcacctaagaaacactttttgctgattccttttttttgcattcttgctag