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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctacggctaagcttcagtcagacaaatcctcaagatggtaagtctttgatctttctgcttttcaatagGTTACAGGAAGAAAGGTGACATCTTTTCCAGGATTTGTCACTCAGACTGGCCATTGACCTGAAAACAAG

Basic information

species Oryza sativa
transcript LOC_Os01g60060.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88762309|gb|CI771865.1|CI771865
EST:     GTGGTACGATGGTGGAGATGCAGTGGCTGCTACTTCTGTTCATGCTCTTG                         GTTACAGGAAGAAAGGTGACATCTTTTCCAGGATTTGTCACTCAGACTGGC
genomic: GTGGTACGATGGTGGAGATGCAGTGGCTGCTACTTCTGTTCATGCTCTTGgtgagcctac ... ttttcaatagGTTACAGGAAGAAAGGTGACATCTTTTCCAGGATTTGTCACTCAGACTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtcagacaaatcctcaagatggtaagtctttgatctttctgcttttcaatagGTTACAGGAAGAAAGGTGACATCTTTTCCAGGATTTGTCACTCAGACTGGCCATTGACCTGAAAACAAG
                              ctttgat  putative branch site (score: 5)
                             tctttgatctttctgc  CT-rich tract
                                             ttttcaata  TA-rich tract