Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggtggcttaattaatgttcagtgtcgatgattcctgttttggttataagtatcaacaagttgacctatgcccattatgcacattctgattacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAGATGGAAACACGAAGAAAAGAATGGGTAGAA

Basic information

species Oryza sativa
transcript LOC_Os01g59440.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59440.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 5
tcggtggcttaattaatgttcagtgtcgatgattcctgttttggttataagtatcaacaagttgacctatgcccattatg-cacattctgattacg--tgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAGATGGA--AACACGAAGAAAAGAATGGGTAGAA
   ||    |     |||     | |   | |  |   |    ||| ||  |  | |   | |  ||||      |  |  |   |||   ||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||   | |||||| |||||||| | |||  
---gtattctccagcatgcatgttttatgtaacacaaatgcatgttttacttggccatgtgcttccctaaagaagtagtaacttgttcatgttacccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATATGACACCAACTGCTAGAGGGGGCACCACGAACAAAAGAATCGCTAG--

upper sequence: LOC_Os01g59440.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G121820_T02 (Zea mays), 3'ss of exon 1
-tcggtggcttaattaat-gttcagtgtcgatgattcctgttttggttataagtatcaacaagttgacctatgcccattatgcacattctgattacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAGATGGAAACACGAAGAAAAGAATGGGTAGAA
 |   ||  ||| |||    |  | |  ||   |        ||| | ||      |||     ||  |    |||      | |   |      | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||| |||||||||||||||| || | ||||||||||||||  | |||||
atgcatgttttacttagccatgtacttccgtaaagaagcaacttgttcatgttatgcaattg--tgttccccccccccccccccccccccccccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATACGACACCAACTGCTAGAGGGCACCACGAAGAAAAGAACTGCTAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88408988|gb|CI556696.1|CI556696
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88464401|gb|CI544862.1|CI544862
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88448287|gb|CI555142.1|CI555142
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|2317317|gb|C22371.1|C22371
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88276204|gb|CI396808.1|CI396808
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAG-ACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88241413|gb|CI241262.1|CI241262
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|66916421|gb|CX103269.1|CX103269
EST:     TGTGGAACAATTCCTACATCATGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|29642936|gb|CB647943.1|CB647943
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|87018477|gb|CI252231.1|CI252231
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|55440912|gb|CV733769.1|CV733769
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|87034659|gb|CI189283.1|CI189283
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88323773|gb|CI558794.1|CI558794
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86424519|gb|CI063280.1|CI063280
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAAACTACAAGGCCTGGCTG
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAA-CTACAAGGCCTGGCTG
EST: gi|88323913|gb|CI561322.1|CI561322
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|87036087|gb|CI189534.1|CI189534
EST:     TGTGGAACAATTCCTACATCGGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|3767181|gb|AU031291.1|AU031291
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|58593542|gb|CF991850.1|CF991850
EST:     GTGGAACAAGTTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: GTGGAACAA-TTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86424442|gb|CI063203.1|CI063203
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88515042|gb|CI442696.1|CI442696
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88992551|gb|CI035636.1|CI035636
EST:     GGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: GGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88239634|gb|CI238796.1|CI238796
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88442492|gb|CI544059.1|CI544059
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86492888|gb|CI135521.1|CI135521
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88323641|gb|CI556272.1|CI556272
EST:     AATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: AATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88381449|gb|CI528429.1|CI528429
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86424517|gb|CI063278.1|CI063278
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88413978|gb|CI530950.1|CI530950
EST:     TGTGGAACAATTCCTACATCAGGACCATTGGAGCACATTCCCCTAAGCCA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAAGTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|89163681|gb|CI100571.1|CI100571
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88442133|gb|CI560374.1|CI560374
EST:     GACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: GACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|157652581|gb|EX452215.1|EX452215
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86545317|gb|CI185523.1|CI185523
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|8856670|gb|AU093988.1|AU093988
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88323241|gb|CI550920.1|CI550920
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|11173068|gb|AU164597.1|AU164597
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|11442641|gb|BF430544.1|BF430544
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|24468891|gb|CA305840.1|CA305840
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86253994|gb|CI058721.1|CI058721
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|3548933|gb|AF074734.1|AF074734
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAANAANAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTG
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAG-AAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTG
EST: gi|86434587|gb|CI105820.1|CI105820
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86252357|gb|CI056094.1|CI056094
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88201609|gb|CI201964.1|CI201964
EST:     ATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: ATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|2317622|gb|C22676.1|C22676
EST:     TGTGGAACAATTCCTACATCAGGNCCATTTGAGCACATTCCCCTAAGCAA                         CTTTGANAAGAACCCACGCTTGNAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88199587|gb|CI199437.1|CI199437
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88471532|gb|CI408803.1|CI408803
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86826587|gb|CI364158.1|CI364158
EST:     TCTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|27578350|gb|CB001045.1|CB001045
EST:     GAGCACATTCCCCTAAGCAA                         CGTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: GAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|55409093|gb|CV721469.1|CV721469
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|218479908|gb|FG956823.1|FG956823
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88245833|gb|CI245682.1|CI245682
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|86419874|gb|CI054675.1|CI054675
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88477444|gb|CI414715.1|CI414715
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
EST: gi|88520127|gb|CI447781.1|CI447781
EST:     TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT
genomic: TGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga ... ttacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataagtatcaacaagttgacctatgcccattatgcacattctgattacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAGATGGAAACACGAAGAAAAGAATGGGTAGAA
                                       ttctgat  putative branch site (score: 3)
                             attat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcggtggcttaattaatgttcagtgtcgatgattcctgttttggttataagtatcaacaagttgacctatgcccattatgcacattctgattacgtgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAGATGGAAACACGAAGAAAAGAATGGGTAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - -gatgatt
- - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - caacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattctg