1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtacaattcctggtgctgagtgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
species | Oryza sativa |
transcript | LOC_Os01g59440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGGCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTTACATCAGGGACCAEST: gi|88241413|gb|CI241262.1|CI241262
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCT-ACATCAGG-ACCA
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|66916421|gb|CX103269.1|CX103269
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGTGCCAATCCCAATGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTATGTGGAACAATTCCTACATCATGACCATTEST: gi|29642936|gb|CB647943.1|CB647943
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|87018477|gb|CI252231.1|CI252231
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|55440912|gb|CV733769.1|CV733769
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|87034659|gb|CI189283.1|CI189283
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86424519|gb|CI063280.1|CI063280
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|87036087|gb|CI189534.1|CI189534
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCGGGACCATTEST: gi|3767181|gb|AU031291.1|AU031291
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|27577115|gb|CA999809.1|CA999809
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|58593542|gb|CF991850.1|CF991850
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: CTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAAGTTCCTACATCAGGACCATEST: gi|86424442|gb|CI063203.1|CI063203
genomic: CTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAA-TTCCTACATCAGGACCAT
EST: GGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88515042|gb|CI442696.1|CI442696
genomic: GGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88239634|gb|CI238796.1|CI238796
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88442492|gb|CI544059.1|CI544059
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: GGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86492888|gb|CI135521.1|CI135521
genomic: GGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88381449|gb|CI528429.1|CI528429
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86424517|gb|CI063278.1|CI063278
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88413978|gb|CI530950.1|CI530950
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: CTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|89163681|gb|CI100571.1|CI100571
genomic: CTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|157652581|gb|EX452215.1|EX452215
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86545317|gb|CI185523.1|CI185523
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|8856670|gb|AU093988.1|AU093988
genomic: CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|11173068|gb|AU164597.1|AU164597
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|11442641|gb|BF430544.1|BF430544
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|24468891|gb|CA305840.1|CA305840
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTATGTGGAACAATTCCTACATCAGGACCATTEST: gi|86253994|gb|CI058721.1|CI058721
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|3548933|gb|AF074734.1|AF074734
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86434587|gb|CI105820.1|CI105820
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86252357|gb|CI056094.1|CI056094
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88199587|gb|CI199437.1|CI199437
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88471532|gb|CI408803.1|CI408803
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: GGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86826587|gb|CI364158.1|CI364158
genomic: GGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTCTGGAACAATTCCTACATCAGGACCATTEST: gi|55409093|gb|CV721469.1|CV721469
genomic: ATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: CCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|218479908|gb|FG956823.1|FG956823
genomic: CCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTATGTGGAACAATTCCTACATCAGGACCATTEST: gi|88245833|gb|CI245682.1|CI245682
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|86419874|gb|CI054675.1|CI054675
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88477444|gb|CI414715.1|CI414715
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTEST: gi|88520127|gb|CI447781.1|CI447781
genomic: CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: AGTCTTAAAGTTGT TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: AGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
tgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
ttttacccccttgttc CT-rich tract
aatgtgataaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacaattcctggtgctgagtgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA