1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGCCAGTCTGCTTCTTGTGTGGCTTACGTCCTTATGATGTACAAGGAGGCTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactcttgatttcttgtgtggtttatgcttaaattccggcttccatgagatctagggtaattcagacatcaccgatggaactatatcatatgctc...
species | Oryza sativa |
transcript | LOC_Os01g58114.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|58687679|gb|CK076366.1|CK076366
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|86504045|gb|CI146678.1|CI146678
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|29642895|gb|CB647902.1|CB647902
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|89185466|gb|CI051794.1|CI051794
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCCATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|86434558|gb|CI105791.1|CI105791
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAGCAATATGACACGGCTTEST: gi|218493202|gb|FG958053.1|FG958053
genomic: CAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTEST: gi|8527546|gb|AU092361.1|AU092361
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCCAACTTTTTTGAGAACAATATGACACGGCTEST: gi|58594574|gb|CF992882.1|CF992882
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCT-CAACTTTTTTGAGAACAATATGACACGGCT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|29643384|gb|CB648391.1|CB648391
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|29676478|gb|CB672753.1|CB672753
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|87006893|gb|CI275201.1|CI275201
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTEST: gi|29678212|gb|CB674487.1|CB674487
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
EST: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACC ATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
genomic: CTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactc ... ttccatgcagATAAAAGATGCTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCAGTCTGCTTCTTGTGTGGCTTACGTCCTTATGATGTACAAGGAGGCTGGACTCTTTGACCCAATTGCCAGCTCTATAGAAGTTACTGAATTCACCgtaagtactcttgatttcttgtgtggtttatgcttaaattccggcttccatgagatctagggtaattcagacatcaccgatggaactatatcatatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT