1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtccccgctgcagctgcttttgtttgtaatcagcatttctgatcattgatacacatatgcatgatcttttaccttaacatagGTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGAACACTTAGAGCACTTTGGGATGTTTTCCCCCTGTTTACAAATACTCAAT
species | Oryza sativa |
transcript | LOC_Os01g58114.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCATACCCTTGATTTCAAAGAATGGGAAAGCGAGGCTGAATATGAATAT GTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGAEST: gi|58655987|gb|CK044667.1|CK044667
genomic: AGCATACCCTTGATTTCAAAGAATGGGAAAGCGAGGCTGAATATGAATATgtaagtcccc ... cttaacatagGTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGA
EST: AGCATACCCTTGATTTCAAAGAATGGGAAAGCGAGGCTGAATATGAATAT GTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGA
genomic: AGCATACCCTTGATTTCAAAGAATGGGAAAGCGAGGCTGAATATGAATATgtaagtcccc ... cttaacatagGTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGA
aatcagcatttctgatcattgatacacatatgcatgatcttttaccttaacatagGTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGAACACTTAGAGCACTTTGGGATGTTTTCCCCCTGTTTACAAATACTCAAT
ccttaac putative branch site (score: 3)
tcttttacctt CT-rich tract
atctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccccgctgcagctgcttttgtttgtaatcagcatttctgatcattgatacacatatgcatgatcttttaccttaacatagGTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGAACACTTAGAGCACTTTGGGATGTTTTCCCCCTGTTTACAAATACTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA