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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGCTGCTTTTGTCACCGGTGCTCTGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggtacacacactacagattcttaagctactgaaactatggtcctatggacctatggttaccaaggtatgatcagtagttttctgtcgagtccatgattcatgcagtagcattaccatccttgatttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g57710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g57710.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G116670_T01 (Zea mays), 5'ss of exon 3
ACTGGCTGCTTTTGTCACCGGTGCTCTGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggtacacacactacagattcttaagctactgaaactatggtcctatggacctatggttaccaaggtatgatcagtagttttctgtcgagtccatgattcatgcagtagcattaccatccttgatttgcag
 || || ||||| |||||||| ||||||||||||||||| ||||| || ||||| || |||||||||||||| ||||||||||| ||||| || ||||||||     |||||||| || ||     |    ||      |     | ||||    |  | | | | | |||     ||   ||| |  |   | |||  || |||||       | ||   ||              
TCTCGCCGCTTTCGTCACCGGGGCTCTGAGCGGCCTCTTCGGCATCGGAGGAGGGCTGCTTCTGAACCCTGTCCTTCTTCAGATCGGAATTCCCCCGCAGgtcgtacggtacaca-acaacgacgccccgggc------attcgcgttcctccctaa-tgttgctgcaaagtccatatatataggtaccgtaccagtgaatcattcaattctatgtatctgcag-------------

upper sequence: LOC_Os01g57710.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G116670_T02 (Zea mays), 5'ss of exon 3
ACTGGCTGCTTTTGTCACCGGTGCTCTGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggtacacacactacagattcttaagctactgaaactatggtcctatggacctatggttaccaaggtatgatcagtagttttctgtcgagtccatgattcatgcagtagcattaccatccttgatttgcag
        |||| |||||||| ||||||||||||||||| ||||| || ||||| || |||||||||||||| ||||||||||| ||||| || ||||||||     |||||||| || ||     |    ||      |     | ||||    |  | | | | | |||     ||   ||| |  |   | |||  || |||||       | ||   ||              
--------CTTTCGTCACCGGGGCTCTGAGCGGCCTCTTCGGCATCGGAGGAGGGCTGCTTCTGAACCCTGTCCTTCTTCAGATCGGAATTCCCCCGCAGGTCGTACGgtacaca-acaacgacgccccgggc------attcgcgttcctccctaa-tgttgctgcaaagtccatatatataggtaccgtaccagtgaatcattcaattctatgtatctgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86505990|gb|CI148623.1|CI148623
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|87015232|gb|CI275422.1|CI275422
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|86539782|gb|CI179988.1|CI179988
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|86597951|gb|CI276737.1|CI276737
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|88984478|gb|CI015029.1|CI015029
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|86496301|gb|CI138934.1|CI138934
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|86435520|gb|CI106753.1|CI106753
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|88222540|gb|CI222496.1|CI222496
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
EST: gi|86844209|gb|CI337596.1|CI337596
EST:     GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAG                         ACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG
genomic: GAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGgtacagtggt ... tgatttgcagACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCG