1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGgtatgccccccttgcttgctagcctcgtgacgtgttctgtcgtgccgtaagcttctcgagcctccgttacacagttaaagcaacaagaccagcgcaccat...
species | Oryza sativa |
transcript | LOC_Os01g57710.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAG GGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCAGCCTGEST: gi|87015232|gb|CI275422.1|CI275422
genomic: GGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGgtatgccccc ... atctgctcagGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTG
EST: GGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAG GGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTGEST: gi|86496301|gb|CI138934.1|CI138934
genomic: GGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGgtatgccccc ... atctgctcagGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTG
EST: GGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAG GGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTG
genomic: GGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGgtatgccccc ... atctgctcagGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGgtatgccccccttgcttgctagcctcgtgacgtgttctgtcgtgccgtaagcttctcgagcctccgttacacagttaaagcaacaagaccagcgcaccat
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