1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAATCATATTCAAATGGAGAAAGATCTACGGCATCAGAATTTGATGATAATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacctactgcatatttttagtttactagtaatagtgcacgtgcaaggcacattcttgcaagggcatgttcatacatacactgagttcagaaaca...
species | Oryza sativa |
transcript | LOC_Os01g56910.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|58661691|gb|CK050371.1|CK050371
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|86477758|gb|CI120391.1|CI120391
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|87039343|gb|CI193965.1|CI193965
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|88265073|gb|CI368847.1|CI368847
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTT-GAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAACAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|218478385|gb|FG957617.1|FG957617
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATCATATTCAAATGGAGAAAGATCTACGGCATCAGAATTTGATGATAATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacctactgcatatttttagtttactagtaatagtgcacgtgcaaggcacattcttgcaagggcatgttcatacatacactgagttcagaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT