1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctatttgtttctttatagtccttcattgagcagctttgtgatgcgtttttttccctaattcagtagcaatgctcagctccatgttgcatcatttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTGATGGGCAGGTTGGCAAACTCAGCGACATTCTTCCTGGACCAGCAGCTG
species | Oryza sativa |
transcript | LOC_Os01g56910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|58661691|gb|CK050371.1|CK050371
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|86477758|gb|CI120391.1|CI120391
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|87039343|gb|CI193965.1|CI193965
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|88265073|gb|CI368847.1|CI368847
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTT-GAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAACAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTEST: gi|218478385|gb|FG957617.1|FG957617
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
EST: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAG GTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
genomic: ATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCATTTGTTACCCAGgtgagtaacc ... catttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCT
gtttttttccctaattcagtagcaatgctcagctccatgttgcatcatttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTGATGGGCAGGTTGGCAAACTCAGCGACATTCTTCCTGGACCAGCAGCTG
ccctaat putative branch site (score: 18)
atcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatttgtttctttatagtccttcattgagcagctttgtgatgcgtttttttccctaattcagtagcaatgctcagctccatgttgcatcatttatcagGTTGGGAGCAAATTTGGGGAGAACACTTCAAGATGGGGGTCCATAATCTCTGATGGGCAGGTTGGCAAACTCAGCGACATTCTTCCTGGACCAGCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - tgtttct
- - - - - - - - - -tccttca
- - - - - - - - - - - - - - gagcagc
- - - - - - - - - - - - - - - - - - - gtgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgc