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gtatgttcagtgcttcttctatttttggaatcttaaactttggttccatggcaaaggtaccgatgaaactattttcattcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCTTGCCTCATCTGATTCAGATGGTACAGTTATTGTATGGAAGCGGGCAT
species | Oryza sativa |
transcript | LOC_Os01g56860.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAG GGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGEST: gi|88226863|gb|CI224848.1|CI224848
genomic: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGgtatgttcag ... attcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTG
EST: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAG GGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGEST: gi|88282659|gb|CI404055.1|CI404055
genomic: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGgtatgttcag ... attcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTG
EST: AATAAACTTCAG GGACATGGTTCTCCANTAATNTGGAGTNGCCTGGAGTCATGGGGAAAATTTEST: gi|86501004|gb|CI143637.1|CI143637
genomic: AATAAACTTCAGgtatgttcag ... attcgtgaagGGACATGGTTCTCCAGTAAT-TGGAGTGGCCTGGAGTCATGGGGAAAATTT
EST: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAG GGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGEST: gi|38471309|gb|CF955440.1|CF955440
genomic: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGgtatgttcag ... attcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTG
EST: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAGCTTCAG GGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGEST: gi|27577384|gb|CB000079.1|CB000079
genomic: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGgtatgttcag ... attcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTG
EST: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAG GGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTG
genomic: ACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGgtatgttcag ... attcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTG
cttaaactttggttccatggcaaaggtaccgatgaaactattttcattcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCTTGCCTCATCTGATTCAGATGGTACAGTTATTGTATGGAAGCGGGCAT
ttttcattc CT-rich tract
aaactattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcagtgcttcttctatttttggaatcttaaactttggttccatggcaaaggtaccgatgaaactattttcattcgtgaagGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCTTGCCTCATCTGATTCAGATGGTACAGTTATTGTATGGAAGCGGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG