1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaaataaaacctttttttttccttttcagttgttgcttgttggttacctcaatcttaaagctgttgataatccaaactctcatttctgatact...
species | Oryza sativa |
transcript | LOC_Os01g56860.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTG TCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAEST: gi|88226863|gb|CI224848.1|CI224848
genomic: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaa ... gaatgtaaagTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAA
EST: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTG TCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAEST: gi|86501004|gb|CI143637.1|CI143637
genomic: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaa ... gaatgtaaagTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAA
EST: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTG TCACGGTCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAEST: gi|38471309|gb|CF955440.1|CF955440
genomic: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaa ... gaatgtaaagTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAA
EST: CCGTGCTTC-TTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTG TCACGGGCAGTGAGGATGC-AATGTTTACTTCTACGATTTGACACGGCCAAEST: gi|27577384|gb|CB000079.1|CB000079
genomic: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaa ... gaatgtaaagTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAA
EST: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTG TCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAA
genomic: CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaa ... gaatgtaaagTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGgtgagtaaaaataaaacctttttttttccttttcagttgttgcttgttggttacctcaatcttaaagctgttgataatccaaactctcatttctgatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata