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...tgagttgtcgtattgatggaaaccagtctttttgaacctgacagggattcttacatcatatatcaagttgattatacttcatctctctcatgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGGAGAATGGCTATAGAATAACTTCTACAGCAGCCACTGGTGACCAAGCTG
species | Oryza sativa |
transcript | LOC_Os01g56580.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|58683649|gb|CK072336.1|CK072336
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|218502457|gb|FG966789.1|FG966789
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGTCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|58598509|gb|CK009037.1|CK009037
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|218479830|gb|FG949479.1|FG949479
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|12623249|gb|AU173462.1|AU173462
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|29676347|gb|CB672622.1|CB672622
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|32948151|gb|BP184723.1|BP184723
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|29629025|gb|CB634036.1|CB634036
genomic: GAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|58678949|gb|CK067636.1|CK067636
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGEST: gi|58609988|gb|CK038021.1|CK038021
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
EST: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAG GTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
genomic: GAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtgg ... tgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGG
gattcttacatcatatatcaagttgattatacttcatctctctcatgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGGAGAATGGCTATAGAATAACTTCTACAGCAGCCACTGGTGACCAAGCTG
cttcatctctctcat CT-rich tract
atcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttgtcgtattgatggaaaccagtctttttgaacctgacagggattcttacatcatatatcaagttgattatacttcatctctctcatgtactgcagGTAGTAGAATTGGATTTTTTATATCCTAGTGAAGGTATCCACCGGCGTTGGGAGAATGGCTATAGAATAACTTCTACAGCAGCCACTGGTGACCAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG