Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGATGAAGAACCAAACTACGCAAAGCTTATTTCCCTTTTTGATGAATTGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttacatcagaaattttttttcttcatattacagtatcagctagtcaatccacccaattttaatataattcacatgatttgacattgaatggtttctatatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g56580.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56580.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 11
ATTTGATGAAGAACCAAACTACGCAAAGCTTATTTCCCTTTTTGATGAATTGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgtt-attttacatcagaaattttttttcttcatattacagtat-cagctagtca-----atccacccaattttaatataattcacatgatttgacattgaatggtttctatatgcag
|||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  | ||||||  |||| ||  | ||    |     ||| ||||    ||| ||  || |       ||      ||||     |||  |  | | ||||  ||||  ||   ||| ||| | ||
ATTTGATGAAGAACCAAATTACTCAAAGCTTATTTCCCTTTTCGATGAATTGATTGAGCCCCAGCATTTGAGGCCTATTAGAATTGATGGTGCATTGAAGgtttgtttttcactacaaggaatgacatttcctattttgttatacaattatttttatgcatttctgtaattactggatatctggcttaattttgcatttgattacttccatacgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4714662|gb|AU055779.1|AU055779
EST:     TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAG                         GCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
genomic: TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttac ... ctatatgcagGCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
EST: gi|58609933|gb|CK037966.1|CK037966
EST:     TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAG                         GCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
genomic: TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttac ... ctatatgcagGCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
EST: gi|58609726|gb|CK037759.1|CK037759
EST:     TGATTGAGCCCCAGCATTTGAGGCCTATTAGAGTCGATGGTGCTCTAAAG                         GCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTT
genomic: TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttac ... ctatatgcagGCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTT
EST: gi|66914155|gb|CX101003.1|CX101003
EST:     TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAG                         GCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
genomic: TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttac ... ctatatgcagGCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
EST: gi|702121|gb|D48412.1|D48412
EST:     TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAG                         GCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGGAAGATGNACA
genomic: TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttac ... ctatatgcagGCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAG-AAGATGAACA
EST: gi|5005377|gb|AU070539.1|AU070539
EST:     TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAG                         GCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA
genomic: TGATTGAGCCCCAGCATTTGAGGCCTATTAGAATCGATGGTGCTCTAAAGgttattttac ... ctatatgcagGCTGGACAAAAACGTGGAAGGTTGCTTGTAAATCTTGAAGAAGATGAACAA