1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtacgaatacatgactaattcctgtgtacattgtttttcttcacagttctctctaaccagaccattcaacttacatttcttgttcaagcgtcaactcgatcactactctaaccttgtcccatactgttgtctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAGTATCTTGAGGCATACCCTGCACACCAACTCGGGCTTAGCATATTCGCA
species | Oryza sativa |
transcript | LOC_Os01g56580.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|218502457|gb|FG966789.1|FG966789
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACGCAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|88691408|gb|CI733486.1|CI733486
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|88228655|gb|CI228135.1|CI228135
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|218479830|gb|FG949479.1|FG949479
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACGCAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|66925445|gb|CX112293.1|CX112293
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACGCAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|86477548|gb|CI120181.1|CI120181
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|29676347|gb|CB672622.1|CB672622
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|87022158|gb|CI259230.1|CI259230
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|86415053|gb|CI069456.1|CI069456
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: CAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTTCATTGCTTCGATATGCTATGGCCGGACAEST: gi|29685518|gb|CB681793.1|CB681793
genomic: CAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: CTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|32948151|gb|BP184723.1|BP184723
genomic: CTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|29623308|gb|CB628319.1|CB628319
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACGCAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|4714663|gb|AU055780.1|AU055780
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACEST: gi|163918227|gb|EG714811.1|EG714811
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAA-Ggtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGAC
EST: CTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTGGATATGCTATGGCCGGACAEST: gi|88691475|gb|CI733553.1|CI733553
genomic: CTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|87022798|gb|CI269734.1|CI269734
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|29629025|gb|CB634036.1|CB634036
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACGCAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|88691488|gb|CI733566.1|CI733566
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAEST: gi|58678949|gb|CK067636.1|CK067636
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
EST: AGACGCAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAG GAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
genomic: AGACACAAGAAACTCTTAGAACATCTGCTTTTCCAAGCAACCATGTGAAGgtacgaatac ... ctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACA
aagcgtcaactcgatcactactctaaccttgtcccatactgttgtctttttgtagGAGAAATGGGCCAAGAATCTTTACATTGCTTCGATATGCTATGGCCGGACAGTATCTTGAGGCATACCCTGCACACCAACTCGGGCTTAGCATATTCGCA
ctctaac putative branch site (score: 74)
ttgtcttttt putative PPT
tttttgta TA-rich tract