1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...agtcaaaaatcaaaagaatatacaacttgggtcactgtgtggcttgagcttcaaaataccttttcaataacgtccttgtttcccttttttttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGAAATGATGATGGATTGTTCATTAGCTCAGTGGCATCTTCAGCCAATCTT
species | Oryza sativa |
transcript | LOC_Os01g56580.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAG ATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGEST: gi|58598509|gb|CK009037.1|CK009037
genomic: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAGgtaacaaact ... ttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGG
EST: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAG ATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGEST: gi|58609933|gb|CK037966.1|CK037966
genomic: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAGgtaacaaact ... ttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGG
EST: GCAAATCAGTGGATATCAGTCCATAATGCTCGGAGACCCATGAAACAAAG ATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGEST: gi|66914155|gb|CX101003.1|CX101003
genomic: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAGgtaacaaact ... ttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGG
EST: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAG ATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGEST: gi|5005377|gb|AU070539.1|AU070539
genomic: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAGgtaacaaact ... ttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGG
EST: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAG ATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGG
genomic: GCAAATCAGTGGATATCAGTCTATAATGCTAGGAGACCCATGAAACAAAGgtaacaaact ... ttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGG
gagcttcaaaataccttttcaataacgtccttgtttcccttttttttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGAAATGATGATGGATTGTTCATTAGCTCAGTGGCATCTTCAGCCAATCTT
caataac putative branch site (score: 81)
cgtccttgtttccctt CT-rich tract
ttttttttatcaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcaaaaatcaaaagaatatacaacttgggtcactgtgtggcttgagcttcaaaataccttttcaataacgtccttgtttcccttttttttatcaacagATACCATTACAATGTAGCAGATGCCAGACTTCATCAACACATAGAGAAGGGAAATGATGATGGATTGTTCATTAGCTCAGTGGCATCTTCAGCCAATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -caaaaat
- - - - - -aaaagaa
- - - - - - - - - -atacaac
- - - - - - - - - - - - - - - - - ctgtgtg
- - - - - - - - - - - - - - - - - - - - - - - agcttca