1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattctgaacttcgcaattttgcctcaaattttaacttgttcctgtccgttgtctgctcgctaatgaagttgttccctctccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGC
species | Oryza sativa |
transcript | LOC_Os01g56520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|86482881|gb|CI125514.1|CI125514
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGTTGCCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88223563|gb|CI223412.1|CI223412
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88992801|gb|CI035763.1|CI035763
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|86425351|gb|CI070448.1|CI070448
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|3759682|gb|C96940.1|C96940
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACNCCTTAGGAACNTTGCGGTAGACAAGAACTGGANCCEST: gi|88908465|gb|CI091058.1|CI091058
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88510138|gb|CI437644.1|CI437644
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|8930555|gb|BE225319.1|BE225319
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGCAGACAAGAACTGGAGCCEST: gi|88268046|gb|CI378818.1|CI378818
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|86432137|gb|CI085748.1|CI085748
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAGAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|58590658|gb|CF988966.1|CF988966
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: AGTGACGATAGTTTGGGTGGCAGTCAGCCTACCTACTCTCAAGCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGCAGACAAGAACTGGAGCCEST: gi|86872406|gb|CI342030.1|CI342030
genomic: AGTGACGAT-GTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTT-GGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|86507304|gb|CI149937.1|CI149937
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|86259576|gb|CI065449.1|CI065449
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88282616|gb|CI404012.1|CI404012
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATNTTTGGGTTGCAGTCAGCCTACGTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|33663698|gb|CF294665.1|CF294665
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCANCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTANGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88848672|gb|CI087194.1|CI087194
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|109712254|gb|CI104862.1|CI104862
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88846728|gb|CI373496.1|CI373496
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88292223|gb|CI535017.1|CI535017
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|89180192|gb|CI044471.1|CI044471
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88275470|gb|CI395321.1|CI395321
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACTTTGCGGTAGACAAGAACTGGAGCCEST: gi|88903439|gb|CI088977.1|CI088977
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCEST: gi|88476741|gb|CI414012.1|CI414012
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
EST: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAG GCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
genomic: CAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGgtattctgaa ... ccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCC
cttgttcctgtccgttgtctgctcgctaatgaagttgttccctctccaaatgcagGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGC
cgctaat putative branch site (score: 3)
ttgttccctctcc putative PPT
taatgaa TA-rich tract