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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtctaagagcaccgtgtactggcatggtgtaagaaaattgttgtttttcacttttatattctctatatttctcatattgaatgatttttcctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGC

Basic information

species Oryza sativa
transcript LOC_Os01g56520.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58587877|gb|CF986185.1|CF986185
EST:     CTCCCCCTCCCTCCG                         AAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGG
genomic: CTCCCCCTCCCTCCGgtgagtgcca ... cctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacttttatattctctatatttctcatattgaatgatttttcctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGC
                                        tttttcctatt  CT-rich tract
       ttttatattctctata  TA-rich tract