1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatttactcaaatgttgattggtaatttgttttactctcagcaccctttcctcagaacttgatgatcattcttatgatattttttttcttctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATTTCTGGAGGATGATTTGCCCGATAGTCCTGATGCACTCGACCTCCAAAA
species | Oryza sativa |
transcript | LOC_Os01g56200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACACAAAACAAGAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|88249958|gb|CI249807.1|CI249807
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|58668997|gb|CK057683.1|CK057683
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: ACACAAAACAAAAGGCTCCGTTCAAGGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|86429043|gb|CI075724.1|CI075724
genomic: ACACAAAACAAAAGGCTCCGTTCAA-GGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|29630864|gb|CB635873.1|CB635873
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|58594357|gb|CF992665.1|CF992665
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|87041286|gb|CI195908.1|CI195908
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: CAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTTAACTGCTCGCAGGTGCTCGACAAAEST: gi|88288804|gb|CI517935.1|CI517935
genomic: CAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCC-TAACTGCTCGCAGGTGCTCGACAAA
EST: AACACAANACCAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|218501333|gb|FG958583.1|FG958583
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|87041405|gb|CI196027.1|CI196027
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: ACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATEST: gi|29628520|gb|CB633531.1|CB633531
genomic: ACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
EST: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAG TTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
genomic: AACACAAAACAAAAGGCTCCGTTCAAGGGTGGATGCACTCATGAAAACAGgtcggaactg ... ctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAAT
ctttcctcagaacttgatgatcattcttatgatattttttttcttctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATTTCTGGAGGATGATTTGCCCGATAGTCCTGATGCACTCGACCTCCAAAA
acttgat putative branch site (score: 5)
tattttttttcttctg putative PPT
atcattcttatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttactcaaatgttgattggtaatttgttttactctcagcaccctttcctcagaacttgatgatcattcttatgatattttttttcttctgttttcagTTGAGCTGGGACGTCGCTACTTCCCTAACTGCTCGCAGGTGCTCGACAAATTTCTGGAGGATGATTTGCCCGATAGTCCTGATGCACTCGACCTCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG