1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGCCCGCACGACTCGTGCCCGCCGGCGATCAGGTTCAACGTCGAGCAAATGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagatacaaaaggatgctcttcttgtgcttgttaggataccaaaaacggtagctgcagaactagaaactgttctgtcaccgattatatttttatgcaa...
species | Oryza sativa |
transcript | LOC_Os01g56200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAG CGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCAEST: gi|33799947|gb|CF325841.1|CF325841
genomic: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagataca ... tctaccacagCGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
EST: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAG CGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCAEST: gi|33796299|gb|CF324017.1|CF324017
genomic: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagataca ... tctaccacagCGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
EST: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAG CGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCAEST: gi|33794514|gb|CF323144.1|CF323144
genomic: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagataca ... tctaccacagCGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
EST: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAG CGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCAEST: gi|29666511|gb|CB662786.1|CB662786
genomic: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagataca ... tctaccacagCGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
EST: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAG CGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCAEST: gi|29666709|gb|CB662984.1|CB662984
genomic: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagataca ... tctaccacagCGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
EST: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAG CGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
genomic: TGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagataca ... tctaccacagCGACGGCTTCTTAACTTCGTCGATAAGACTCTAGTAGAAGATGTTCTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCCGCACGACTCGTGCCCGCCGGCGATCAGGTTCAACGTCGAGCAAATGTACGCGGCGTGGGCGTTCAAGATCACCGAGCTCATCTCGCTGTTCCAGgtgagatacaaaaggatgctcttcttgtgcttgttaggataccaaaaacggtagctgcagaactagaaactgttctgtcaccgattatatttttatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT