1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTTGGTTTCTTGTGACCAAACTGAAGTTTTAGAGCCAAAACGAAAGCACAGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttgtttttacactactatctgaacttttgaaagcagcgtgactattttaatttaatgtttcttcatgcccttcactaacaatctgatattgacag
species | Oryza sativa |
transcript | LOC_Os01g56140.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|32947889|gb|BP184461.1|BP184461
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|33799065|gb|CF325392.1|CF325392
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: AGAAAGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTTCAACTG CCTGTCAACTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|24468778|gb|CA305727.1|CA305727
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: ACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|88688999|gb|CI732575.1|CI732575
genomic: ACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|58589556|gb|CF987864.1|CF987864
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|163919991|gb|EG709797.1|EG709797
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCCEST: gi|88689004|gb|CI732580.1|CI732580
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
EST: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTG CCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
genomic: AGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttg ... atattgacagCCTGTCAGCTCTAGAAGAGAAATGCTCCAAGAATGAACATGATGAAGCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGGTTTCTTGTGACCAAACTGAAGTTTTAGAGCCAAAACGAAAGCACAGAAGGAGTACTATTCAGAAAGTTAATGGAGGGGAAATCACTTCCAACTGgtatgatttgtttttacactactatctgaacttttgaaagcagcgtgactattttaatttaatgtttcttcatgcccttcactaacaatctgatattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG