1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAAGAAGAAAAGAATATTCTTGAAGCTGAACGGAAGGTTTTGTTAGAGGAAAAATATAAGTTGGAGCTGAAAATGGAGGCAATAGTTTCAAGAGAGGAAgtatgtatatttttctccttttattaccacctatatatcattgcgaaagttctgtctaacaaaattgatctcttttgcag
species | Oryza sativa |
transcript | LOC_Os01g56140.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAATATAAGTTGGAGCTGAAAATGGAGGCAATAGTTTCAAGAGAGGAA GCTCTGATTCAGAAGGAATCCCTGCTTGACAAAAGGGAGAGTGAATTATTAEST: gi|29626972|gb|CB631983.1|CB631983
genomic: AAAAATATAAGTTGGAGCTGAAAATGGAGGCAATAGTTTCAAGAGAGGAAgtatgtatat ... tcttttgcagGCTCTGATTCAGAAGGAATCCCTGCTTGACAAAAGGGAGAGTGAATTATTA
EST: --AAATATAAGTTGGAGCTGAAAATGGAGGCAATAGTTTCAAGAGAGGAA GCTCTGATTCAGAAGGAATCCCTGCTTGACAAAAGGGAGAGTGAATTATTA
genomic: AAAAATATAAGTTGGAGCTGAAAATGGAGGCAATAGTTTCAAGAGAGGAAgtatgtatat ... tcttttgcagGCTCTGATTCAGAAGGAATCCCTGCTTGACAAAAGGGAGAGTGAATTATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAAGAAAAGAATATTCTTGAAGCTGAACGGAAGGTTTTGTTAGAGGAAAAATATAAGTTGGAGCTGAAAATGGAGGCAATAGTTTCAAGAGAGGAAgtatgtatatttttctccttttattaccacctatatatcattgcgaaagttctgtctaacaaaattgatctcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA