1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatagatatcaatctaagacatggttattggttaaagagccctgtttgtattttttttaaaggaacaaaccatgtctataatgcttgttgcatgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAACTATTCCTGGAAGGGAGAATGGAGGGAATTGTGACATCAAGAATCTAA
species | Oryza sativa |
transcript | LOC_Os01g55950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAG ATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAEST: gi|58695863|gb|CK084550.1|CK084550
genomic: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAGgtatgacctt ... catgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGA
EST: GTTTACTTGGAAAG ATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAEST: gi|58611848|gb|CK039560.1|CK039560
genomic: GTTTACTTGGAAAGgtatgacctt ... catgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGA
EST: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAGAG ATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAEST: gi|58689824|gb|CK078511.1|CK078511
genomic: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAGgtatgacctt ... catgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGA
EST: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAG ATGCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAEST: gi|58695859|gb|CK084546.1|CK084546
genomic: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAGgtatgacctt ... catgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGA
EST: GAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGGAAAG ATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGEST: gi|58693557|gb|CK082244.1|CK082244
genomic: GAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTT-GGAAAGgtatgacctt ... catgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAG
EST: AGAGGCCTC-TGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAG ATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGA
genomic: AGAGGCCTCTTGCCAACTTACCAACCCCTGAGAACTGTTTACTTGGAAAGgtatgacctt ... catgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGA
ttgtattttttttaaaggaacaaaccatgtctataatgcttgttgcatgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAACTATTCCTGGAAGGGAGAATGGAGGGAATTGTGACATCAAGAATCTAA
ttttttttaaaggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagatatcaatctaagacatggttattggttaaagagccctgtttgtattttttttaaaggaacaaaccatgtctataatgcttgttgcatgattcagATTCAAGAAGGGACTGCTGATTGGCAGAAAATCGCAAATGAAGCAGCAAGAACTATTCCTGGAAGGGAGAATGGAGGGAATTGTGACATCAAGAATCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - -catggtt
- - - - - - - - - - - - - - - - - - -agccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg