1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagaattttttttttggtgttgttctaaatgaagcttttcaatttaggatacctcaatagttccattgtgtgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATCTGCTGAGCTTCTCAATATATGGAATGAGAGGGAAAAAATATTGGCTGA
species | Oryza sativa |
transcript | LOC_Os01g55950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATEST: gi|58690055|gb|CK078742.1|CK078742
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATEST: gi|58605516|gb|CK033549.1|CK033549
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATEST: gi|58690210|gb|CK078897.1|CK078897
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAEST: gi|32947801|gb|BP184373.1|BP184373
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCA
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATEST: gi|58690901|gb|CK079588.1|CK079588
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATEST: gi|58689824|gb|CK078511.1|CK078511
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: TGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTG-AGCATEST: gi|88433405|gb|CI594219.1|CI594219
genomic: TGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATEST: gi|58695533|gb|CK084220.1|CK084220
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
EST: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAG GTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
genomic: GGCGATTTGGTATTTTGAAGGAATTTATGCATACTCCCCTCAAATACCAGgtagaatttt ... tgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCAT
taaatgaagcttttcaatttaggatacctcaatagttccattgtgtgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATCTGCTGAGCTTCTCAATATATGGAATGAGAGGGAAAAAATATTGGCTGA
ttctaaa putative branch site (score: 23)
ttttcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaattttttttttggtgttgttctaaatgaagcttttcaatttaggatacctcaatagttccattgtgtgtatatcagGTGTCCGATTTCCAGGATTAACTCATCCTGGTATAGTGGGGACTGCACCATCTGCTGAGCTTCTCAATATATGGAATGAGAGGGAAAAAATATTGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG