1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcattgctgtattcatctttgaacgttagcttttctgtatttccaaactccaaagtggaatgatgttgacttgctcttttgtttgaacatgtgaagcagGGAAGAAAATCACCTCCACTGATTTTATAGAAGACGTTGAATATATAGTCTACAAAATGATGGCTGCTGAGTTAATTAAGCAGTTTTCAAACATCACCCT
species | Oryza sativa |
transcript | LOC_Os01g55799.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGTGCGCAGEST: gi|88449219|gb|CI565865.1|CI565865
genomic: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGT--GC-Ggtgagtcgtc ... tgtgaagc
EST: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGTGCG GGAAGAAAATCACCTCCACTGATTTTATAGAAGACGTTGAATATATAGTCTEST: gi|29666869|gb|CB663144.1|CB663144
genomic: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGTGCGgtgagtcgtc ... tgtgaagcagGGAAGAAAATCACCTCCACTGATTTTATAGAAGACGTTGAATATATAGTCT
EST: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGTGCG GGAAGAAAATCACCTCCGCTGATTTTATATAAGACGTTGAATATATAGTCTEST: gi|29623350|gb|CB628361.1|CB628361
genomic: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGTGCGgtgagtcgtc ... tgtgaagcagGGAAGAAAATCACCTCCACTGATTTTATAGAAGACGTTGAATATATAGTCT
EST: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGTGCGCAG
genomic: CGGCGGTCGGGACCGGCGAAGAAGCGGCTTTTCGCTGCGGAGGGAGT--GC-Ggtgagtcgtc ... tgtgaagc
aaactccaaagtggaatgatgttgacttgctcttttgtttgaacatgtgaagcagGGAAGAAAATCACCTCCACTGATTTTATAGAAGACGTTGAATATATAGTCTACAAAATGATGGCTGCTGAGTTAATTAAGCAGTTTTCAAACATCACCCT
tgttgac putative branch site (score: 1)
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcattgctgtattcatctttgaacgttagcttttctgtatttccaaactccaaagtggaatgatgttgacttgctcttttgtttgaacatgtgaagcagGGAAGAAAATCACCTCCACTGATTTTATAGAAGACGTTGAATATATAGTCTACAAAATGATGGCTGCTGAGTTAATTAAGCAGTTTTCAAACATCACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - ttgctgt
- - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga