1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaagtcgtcagtctcactgcggctaccggccgccggccggtgaaccaccgtagcggtcagcgtgggggctcatcgatctcaccggcgaactgcttggtttttgtgtgtgtgtgcgtgtgtgtttcagGTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGTACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCAAGG
species | Oryza sativa |
transcript | LOC_Os01g55799.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAG GTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGEST: gi|11025514|gb|AU162115.1|AU162115
genomic: TCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGgtaaagtcgt ... tgtgtttcagGTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAG
EST: TCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAG GTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGEST: gi|33816173|gb|CF333934.1|CF333934
genomic: TCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGgtaaagtcgt ... tgtgtttcagGTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAG
EST: TCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAG GTGGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGA
genomic: TCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGgtaaagtcgt ... tgtgtttcagGTGG-TGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGA
tcgatctcaccggcgaactgcttggtttttgtgtgtgtgtgcgtgtgtgtttcagGTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGTACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCAAGG
atctcac putative branch site (score: 3)
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtcgtcagtctcactgcggctaccggccgccggccggtgaaccaccgtagcggtcagcgtgggggctcatcgatctcaccggcgaactgcttggtttttgtgtgtgtgtgcgtgtgtgtttcagGTGGTGGTCGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGTACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG