1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accaaatggaaatcatttttttagaattgctggtccatttagttattcacgtgaactagtaattccatgcatatttattaacatcaacattttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATG
species | Oryza sativa |
transcript | LOC_Os01g55730.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT ATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACEST: gi|33381195|gb|CF196538.1|CF196538
genomic: AGGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTgtgagtactt ... tttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
EST: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT ATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACEST: gi|38470771|gb|CF954902.1|CF954902
genomic: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTgtgagtactt ... tttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
EST: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT ATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACEST: gi|3767261|gb|AU031371.1|AU031371
genomic: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTgtgagtactt ... tttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
EST: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT ATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACEST: gi|88518445|gb|CI446099.1|CI446099
genomic: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTgtgagtactt ... tttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
EST: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT ATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACEST: gi|66932185|gb|CX119033.1|CX119033
genomic: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTgtgagtactt ... tttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
EST: GCCATAAAAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT ATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
genomic: GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTgtgagtactt ... tttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGAC
ttcacgtgaactagtaattccatgcatatttattaacatcaacattttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATG
tattaac putative branch site (score: 5)
ttttgtt putative PPT
atatttattaacatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaatggaaatcatttttttagaattgctggtccatttagttattcacgtgaactagtaattccatgcatatttattaacatcaacattttgttgcagATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
accaaat
- - - - - - - - - - - - -attgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca