1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttggttgtgctatatttgaatggagattgttgtgaacgttttcttttgtgctgactattaaattattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
species | Oryza sativa |
transcript | LOC_Os01g55730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAG GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTEST: gi|38470771|gb|CF954902.1|CF954902
genomic: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGgtttggttgt ... tattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
EST: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAG GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTEST: gi|3767261|gb|AU031371.1|AU031371
genomic: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGgtttggttgt ... tattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
EST: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAG GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTEST: gi|88518445|gb|CI446099.1|CI446099
genomic: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGgtttggttgt ... tattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
EST: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAG GCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTEST: gi|66932185|gb|CX119033.1|CX119033
genomic: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGgtttggttgt ... tattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
EST: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAG GCCATAAAAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
genomic: GGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGgtttggttgt ... tattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
aatggagattgttgtgaacgttttcttttgtgctgactattaaattattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
tgctgac putative branch site (score: 25)
ttatttt putative PPT
tgactattaaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggttgtgctatatttgaatggagattgttgtgaacgttttcttttgtgctgactattaaattattttgtagGCCATAAGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG