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gtacggttctatgccatatatttttggttttttagatttatgctaaactattacctgtccttaaattgctcgaggcattatggttattcgatacttttggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGTCTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATG
species | Oryza sativa |
transcript | LOC_Os01g55590.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGA GTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTEST: gi|88417003|gb|CI573718.1|CI573718
genomic: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAgtacggttct ... ggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCT
EST: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGA GTTCCAAAAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTEST: gi|58605192|gb|CK033225.1|CK033225
genomic: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAgtacggttct ... ggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCT
EST: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGA GTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTEST: gi|58608782|gb|CK036815.1|CK036815
genomic: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAgtacggttct ... ggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCT
EST: ATCCCAACAATGGCAGTAAAAATGATCAAGCAATTACAGTATTTACTGGA GTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCT
genomic: ATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAgtacggttct ... ggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCT
cctgtccttaaattgctcgaggcattatggttattcgatacttttggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGTCTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATG
ttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggttctatgccatatatttttggttttttagatttatgctaaactattacctgtccttaaattgctcgaggcattatggttattcgatacttttggactaccagGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGTCTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA