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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGGAGGATGAGGAGTCGCAATGTCGTCGCTGCAAAGGCTGCGCAGGACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttttttatctctactaatcaatttgagctttgaggtagatagtaagttcaggaaccctgatgacattggcaatttttttttctgacgcaagtt...

Basic information

species Oryza sativa
transcript LOC_Os01g55570.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33813231|gb|CF332506.1|CF332506
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|117219240|gb|CT845033.1|CT845033
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCACTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88988709|gb|CI039128.1|CI039128
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88977491|gb|CI025227.1|CI025227
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|58590453|gb|CF988761.1|CF988761
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCACTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88979638|gb|CI026024.1|CI026024
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|699911|gb|D46202.1|D46202
EST:     ACAGTTCAGNACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|33818515|gb|CF335088.1|CF335088
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|33824042|gb|CF337834.1|CF337834
EST:     GAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: GAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|3768522|gb|AU032549.1|AU032549
EST:     AGTTCCAGAACCGTCATCCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCCAGG
genomic: AGTT-CAGAACCGTCAT-CCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTG-CAGG
EST: gi|88963183|gb|CI026856.1|CI026856
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG