1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catttttgcatgacggattttgctgcaacagattcagactacctggtgttattcatgcctcgagtacctgaaattattgttcttttgtcctttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCATTTGTTGCATGGGAATTGGAGTTTCCCTTGATAGCAGTAAAGAAGGCAC
species | Oryza sativa |
transcript | LOC_Os01g55290.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGT GTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCAEST: gi|88347980|gb|CI636073.1|CI636073
genomic: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGTgtgaggttct ... tttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCA
EST: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGT GTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCAEST: gi|88347979|gb|CI636072.1|CI636072
genomic: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGTgtgaggttct ... tttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCA
EST: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGT GTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCAEST: gi|88346522|gb|CI637368.1|CI637368
genomic: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGTgtgaggttct ... tttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCA
EST: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGT GTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCEST: gi|88359876|gb|CI617787.1|CI617787
genomic: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGTgtgaggttct ... tttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTC
EST: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGT GTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGGTCTTGATTCA
genomic: CTCGCAAGAGAATCGGAACCGTTTCCAAGTCTCAAAAGCTTGTCGAATGTgtgaggttct ... tttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCA
gtgttattcatgcctcgagtacctgaaattattgttcttttgtcctttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCATTTGTTGCATGGGAATTGGAGTTTCCCTTGATAGCAGTAAAGAAGGCAC
ttattgttcttttgtc CT-rich tract
aaattattgttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttttgcatgacggattttgctgcaacagattcagactacctggtgttattcatgcctcgagtacctgaaattattgttcttttgtcctttcctgtagGTTAAAGGCTTGTCTAATGTAAAGGAGGAAGTATATGGTGCTCTTGATTCATTTGTTGCATGGGAATTGGAGTTTCCCTTGATAGCAGTAAAGAAGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG