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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgtgctcccgtcccttcgattcccctattcaggtggggcgagcgagaaggggaagaggagaggacagctagaactttttcttcccaattctttgcgcagttcttgctcgctatcccttttcctgtttcgtatacggaccagcactgtctgctgcggaaggtttatccgattgtttgtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGATTGGAAAGGGCTGCCATTACGCATCCTTCAAAGTTCAGTACTTTAGTG

Basic information

species Oryza sativa
transcript LOC_Os01g55290.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88574981|gb|CI666750.1|CI666750
EST:     GGATTCACCGAGGCCAGCGACGGCGGCAACTGCTCCTCCCCTCTTACAAG                         GTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
genomic: GGATTCACCGAGGCCAGCGACGGCGGCAACTGCTCCTCCCCTCTTACAAGgtgagatgtg ... gtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
EST: gi|88347980|gb|CI636073.1|CI636073
EST:     CTCCTCCCCTCTTACAAG                         GTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
genomic: CTCCTCCCCTCTTACAAGgtgagatgtg ... gtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
EST: gi|88347979|gb|CI636072.1|CI636072
EST:     CTCCTCCCCTCTTACAAG                         GTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
genomic: CTCCTCCCCTCTTACAAGgtgagatgtg ... gtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
EST: gi|88346522|gb|CI637368.1|CI637368
EST:     GGATTCACCGAGGCCAGCGACGGCGGCAACTGCTCCTCCCCTCTTACAAG                         GTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
genomic: GGATTCACCGAGGCCAGCGACGGCGGCAACTGCTCCTCCCCTCTTACAAGgtgagatgtg ... gtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGAT
EST: gi|88359876|gb|CI617787.1|CI617787
EST:     GATTCACCGAGGCCCAGCGACGGCGGCAACTGCTCCTCCCCTCTTAAAAG                         GTTACACGATGTTTTGTGTGAGGTGCGGGCCCGCCTGCATTCGCCTTTGGA
genomic: GATTCACCGAGG-CCAGCGACGGCGGCAACTGCTCCTCCCCTCTTACAAGgtgagatgtg ... gtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGG-CCGCCTGCATTCGCCTTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacggaccagcactgtctgctgcggaaggtttatccgattgtttgtcacggcagGTTACACGATGTTTTCTGTGAGGTGCGGGCCGCCTGCATTCGCCTTTGGATTGGAAAGGGCTGCCATTACGCATCCTTCAAAGTTCAGTACTTTAGTG
                                      attgttt  TA-rich tract