1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaggatataaaagagaccttgcttctttttaattacatgatcattattgtgatgactgcataactaacatctttttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAAGATTCACCTGGACCAGTGACAAGGAGGCGCTTGGCTATGACTGAAGCA
species | Oryza sativa |
transcript | LOC_Os01g55090.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AA-GTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|29675819|gb|CB672094.1|CB672094
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|88483397|gb|CI420668.1|CI420668
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|88256058|gb|CI358446.1|CI358446
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|86540363|gb|CI180569.1|CI180569
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|86866361|gb|CI336957.1|CI336957
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|88517006|gb|CI444660.1|CI444660
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAEST: gi|86540334|gb|CI180540.1|CI180540
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
EST: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAG TCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
genomic: AAGGTTGCTAGAGTTCAATTAGTTGATAGCCCTGCTCGAGTCACTAGGAGgttaggatat ... tttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACA
ttaattacatgatcattattgtgatgactgcataactaacatctttttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAAGATTCACCTGGACCAGTGACAAGGAGGCGCTTGGCTATGACTGAAGCA
aactaac putative branch site (score: 1)
catctttttttctt CT-rich tract
taacatcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggatataaaagagaccttgcttctttttaattacatgatcattattgtgatgactgcataactaacatctttttttcttagTCAAACAAGGACAACTGGAACACCAACTATTGCTAGAGAAGGATGCTCACAAGATTCACCTGGACCAGTGACAAGGAGGCGCTTGGCTATGACTGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC