1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catgataagactgttagggtataatccctgttgttaatttttgggtaactacttgtttttttcctaacttgctgctaacttgctttgtatcgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTGGAAGAATGGCATCACAAGCTTGGGTAGCAGATAGAGCTGCTGCAATTA
species | Oryza sativa |
transcript | LOC_Os01g55090.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|88360660|gb|CI647670.1|CI647670
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|88294437|gb|CI667411.1|CI667411
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|88388958|gb|CI595192.1|CI595192
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|58690364|gb|CK079051.1|CK079051
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|88570690|gb|CI662063.1|CI662063
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|29675818|gb|CB672093.1|CB672093
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTEST: gi|88367361|gb|CI566327.1|CI566327
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
EST: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGG GTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
genomic: TCTAGGGTTTGGATTTTGGGGGTTATGGCTCCATCTGAGTGCCCGCCGGGgtaaggcaca ... cgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTT
taactacttgtttttttcctaacttgctgctaacttgctttgtatcgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTGGAAGAATGGCATCACAAGCTTGGGTAGCAGATAGAGCTGCTGCAATTA
tgctaac putative branch site (score: 13)
ttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgataagactgttagggtataatccctgttgttaatttttgggtaactacttgtttttttcctaacttgctgctaacttgctttgtatcgatgtgcagGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTGGAAGAATGGCATCACAAGCTTGGGTAGCAGATAGAGCTGCTGCAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
catgata
- - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttg