1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttttttctgaatgatgttcattcttcattattgagaaatagtatgtatgtattcgacacttggacctgatcatatttcatcccattttgatctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGAACAGTTACTGGAGATGCTTTATGAACCTATCAAGCAACGAGGTGGCCTA
species | Oryza sativa |
transcript | LOC_Os01g54900.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGATCCTTTTTGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAG TGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGAEST: gi|58679315|gb|CK068002.1|CK068002
genomic: GAGATCCTTTTTGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAGgtaatgtccc ... atctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGA
EST: AGATCCTTTTGGGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAG TGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGA
genomic: AGATCCTTTTTGGGG-CTTGCACAGCGGAAAATCTAGCTGCAAAACTAAGgtaatgtccc ... atctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGA
gtatgtattcgacacttggacctgatcatatttcatcccattttgatctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGAACAGTTACTGGAGATGCTTTATGAACCTATCAAGCAACGAGGTGGCCTA
ttttgat putative branch site (score: 4)
atcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttctgaatgatgttcattcttcattattgagaaatagtatgtatgtattcgacacttggacctgatcatatttcatcccattttgatctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGAACAGTTACTGGAGATGCTTTATGAACCTATCAAGCAACGAGGTGGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - tttctga
- - - - - -atgatgt
- - - - - - - - - -cattctt
- - - - - - - - - - - - - - - - -gagaaata
- - - - - - - - - - - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacctg