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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATCCTTCCATTTGAGGAAGAAATTTGCAGATTAAATGGGTTGCCTGCTACATATGTGGGCCATCCATTATTGGATGATGCTATTGGCTTGAATATGgtatggacttacgtgctttgtttcaacatcagtgccatcagcctaatatatttttgttgaattttaagacattgctgtccaaatctctcaacagttttac...

Basic information

species Oryza sativa
transcript LOC_Os01g54900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54900.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G176699_T01 (Zea mays), 5'ss of exon 4
GTGTATCCTTCCATTTGAGGAAGAAATTTGCAGATTAAATGGGTTGCCTGCTACATATGTGGGCCATCCATTATTGGATGATGCTATTGGCTTGAATATGgtatggacttacgtg-ctttgtttcaacatcagtgccatcagc----ctaatatattt--ttgttgaattttaagacattgctgtccaaatctctcaacagttttac
||| || |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||| |||||| | || |||||| |||| |  ||  |||||  ||| |||||  |||||||       ||| |||     || |  ||||  | ||  ||  | ||||||||| ||     |     
GTGCATTCTTCCATTTGAGGAAGAAATATGCAGATTAAACGGGTTGCCTGCTACTTATGTGGGCCACCCCTTACTGGATGATGCGATTGGCCTAAACATGgtaaggacctgtgtaactttggctcagcatcaa-gccatcaatgccattaacataaagaattatctaattcaatgat-tttttatccaaatctttctttcat-----