1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTACCACCAGGTATTGCTGGTCAACATAGAAAGGAGCCTGTATGTCCATCACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggataccccacaggccctttcttttacgcaagtacattagtgtgataatttccttttctagttttgctgtaagttggttaatttaatgttctca...
species | Oryza sativa |
transcript | LOC_Os01g54510.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAG ATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGAEST: gi|7212649|gb|AU082952.1|AU082952
genomic: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggat ... atatatgcagATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
EST: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAG ATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGAEST: gi|163928443|gb|EG715435.1|EG715435
genomic: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggat ... atatatgcagATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
EST: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAG ATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGAEST: gi|163925739|gb|EG714575.1|EG714575
genomic: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggat ... atatatgcagATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
EST: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAG ATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGAEST: gi|163928723|gb|EG714716.1|EG714716
genomic: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggat ... atatatgcagATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
EST: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAG ATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGAEST: gi|163927841|gb|EG712925.1|EG712925
genomic: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggat ... atatatgcagATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
EST: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAG ATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
genomic: CACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggat ... atatatgcagATATCTGTTGGGCGTAGACCAGTCACTGGTCTGAAGCTATGCCTGGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTACCACCAGGTATTGCTGGTCAACATAGAAAGGAGCCTGTATGTCCATCACTTCAGTTTAGTTTGATGGGCCCAAAGCTCTTTGTTAGCACTGAACAGgtaaaaggataccccacaggccctttcttttacgcaagtacattagtgtgataatttccttttctagttttgctgtaagttggttaatttaatgttctca
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