1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAATTGGAGTTCAGAAATTACGTCAAAGAAATTGGAAGCGAGAGATTCTCAGATGGGGATAGCAAGTTAAATGCAACTCCCATAAATTACAGTGAGAAGgttagctccatactgatatttctatttaaattaaaataaaagagggagatggcccacctgtaattgctgataataatagaagatcgtcatgagtcatgaa...
species | Oryza sativa |
transcript | LOC_Os01g54510.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGATGGGGATAGCAAGTTAAATGCAACTCCCATAAATTACAGTGAGAAG GATATGACAGTAATCT
genomic: CAGATGGGGATAGCAAGTTAAATGCAACTCCCATAAATTACAGTGAGAAGgttagctcca ... ccttatgcagGATATGACAGTAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTGGAGTTCAGAAATTACGTCAAAGAAATTGGAAGCGAGAGATTCTCAGATGGGGATAGCAAGTTAAATGCAACTCCCATAAATTACAGTGAGAAGgttagctccatactgatatttctatttaaattaaaataaaagagggagatggcccacctgtaattgctgataataatagaagatcgtcatgagtcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcccacc